Problem troubleshooted while installing Phylobayes on Mavericks by LM Davalos:
Problem: Parallel phylobayes (pb_mpi1.5a) does not compile from source on multi-processor mac running OS 10.9. After clearing out any errors having to do with open-mpi, these errors persist:
file BP2util.h
shell: fatal error: 'tr1/unordered_map' file not found
#include <tr1/unordered_map>
original #include <tr1/unordered_map> #tr1 is deprecated in 10.9 and will not compile
modified: #include <unordered_map>
shell: error: use of undeclared identifier 'tr1'
original: class BipartitionHashTable : public tr1::unordered_map<string,T> {};
modified: class BipartitionHashTable : public unordered_map<string,T> {};
file BP2Stat.h
shell: fatal error: 'tr1/unordered_map' file not found
#include <tr1/unordered_map>
original: #include <tr1/unordered_map>
modified: #include <unordered_map>
#define hash_map std::unordered_map
file PolyNode.cpp
shell: error: variable length array of non-POD element type 'string'
original: string retval[degree]; #line 431
modified: string *retval = new string[degree]; #line 431
