I am revisiting my babbler project.
Looking at the Tracer files again, I see that the "babblers_8_newdate" task provided the best convergence. I installed SumTrees to find the consensus tree.
#install Setuptools
wget https://bootstrap.pypa.io/ez_setup.py -O - | sudo python
#enter password
#install SumTrees
Looking at the Tracer files again, I see that the "babblers_8_newdate" task provided the best convergence. I installed SumTrees to find the consensus tree.
#install Setuptools
wget https://bootstrap.pypa.io/ez_setup.py -O - | sudo python
#enter password
#install SumTrees
sudo easy_install -U dendropy
Okay realized I have already made the consensus tree back in October!
See directory /Users/loloyohe/Documents/Timaliidae/Babblers Adaptive Radiation/trees/output_trees
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