Wednesday, January 21, 2015

Downloading new transcriptome data from BGI!

#Enter the ftp address in terminal window
Connected to

220 (vsFTPd 2.2.2)

#input given username and password
#copy from ftp into your current directory
get DR_086_MO_E_1.fq.gz
get DR_086_MO_E_2.fq.gz

#or we can get multiple files
mget DR_086_VN*.fq.gz

#or we can get all the files!
mget *.fq.gz

Now we can unzip the data, concatenate the two files for each species, and run the quality control filter

No comments:

Post a Comment